PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G35770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 245aa    MW: 25730 Da    PI: 7.8861
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G35770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.64.8e-34381531100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                      +C aCk+lrr+C+++Cv+ap+f                 ++ +++fa+vh++FGasnv kll+++p   r++a+++++yeA+ar+ dPvyG+vg
  ORUFI01G35770.1  38 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRREAARTVCYEAQARIADPVYGSVG 131
                      7*********************************998555559*************************************************** PP

           DUF260  79 vilklqqqleqlkaelallkee 100
                      +il+lq+q++ l+ +l++l+++
  ORUFI01G35770.1 132 TILALQHQVSLLQGQLSVLESQ 153
                      ****************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.63837154IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-3838151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MHAAQPPGSS KRRGAVERPA SGAGLQAEEA SSAGPGAPCG ACKFLRRRCV PGCVFAPHFS  60
GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS RVPAALRREA ARTVCYEAQA  120
RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH  180
SAASTLNQVV VNYDDLPHAV DFMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV  240
GQRQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630092.11e-176PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-46LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0E0N3261e-176A0A0E0N326_ORYRU; Uncharacterized protein
TrEMBLQ5N8Y91e-176Q5N8Y9_ORYSJ; Lateral organ boundaries domain protein 18-like
STRINGLOC_Os01g56530.11e-176(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-22LOB domain-containing protein 20